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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17035077_17035172_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17035077 - 17035172
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGCCTG
5'SS Class:
major
3'SS Sequence:
CCCTCTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
TAAACCCTAATT
Flanking Amino Acid:
SIFAMGMVGSGTNNARLAAM
Intron Amino Acid Position:
647

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
64
47.6
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
79.2
0.66
0.7
72.1
32.5
Minor 5ss
42
-0.9
3.1
57.5
46.6
Minor BPS
60.7
0.41
1.7
76.2
39.8

Associated Gene:

Gene:
PSMD2
Ensembl Gene ID:
ENSAPLG00000008557
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008899
17030668 - 17036151
5484