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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17035528_17035619_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17035528 - 17035619
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
TGCCCCCTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TGCCCCCTCCCC
Flanking Amino Acid:
VLVSFLDVRNIILGKSHYVL
Intron Amino Acid Position:
721

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
69
35.8
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
75.3
0.57
0.8
65.4
36.1
Minor 5ss
32.1
-2
3.3
47.2
42.3
Minor BPS
34
-1.2
3.6
53.33
44.1

Associated Gene:

Gene:
PSMD2
Ensembl Gene ID:
ENSAPLG00000008557
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008899
17030668 - 17036151
5484