Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17041760_17042568_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

17041760 - 17042568

Intron Length:

809

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGGGGC

5'SS Class:

major

3'SS Sequence:

GACCCCTGGGCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTCTGAC

U12 Branch Point Sequence:

TCTGCTCTGACC

Flanking Amino Acid:

PIPPKRERKTIRIRDPNQGG

Intron Amino Acid Position:

186

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.7

0.68

64.8

41.3

Major BPS

69.1

0.47

60.7

37.6

Major PPT

54.6

0.11

1.1

49.7

38.9

Minor 5ss

30.1

-2.3

3.5

41.6

45.3

Minor BPS

52.5

0.06

1.8

65.93

40.4

Associated Gene:

Gene:

EIF4G1

Ensembl Gene ID:

ENSAPLG00000008628

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027832

17041205 - 17051404

10200