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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17047198_17047272_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17047198 - 17047272
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTGAGTTGG
5'SS Class:
major
3'SS Sequence:
GTGCCCACCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TGACCCACACCC
Flanking Amino Acid:
RQKEMDDASAPEEKARMKDE
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
57
44.6
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
62.7
0.29
0.9
54.5
35.2
Minor 5ss
36
-1.6
2.9
44.8
43.4
Minor BPS
43.6
-0.5
2
55.45
41.8

Associated Gene:

Gene:
EIF4G1
Ensembl Gene ID:
ENSAPLG00000008628
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021790
17043096 - 17051448
8353
ENSAPLT00000008971
17043096 - 17051448
8353
ENSAPLT00000027832
17041205 - 17051404
10200