About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17049760_17049885_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17049760 - 17049885
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGGAG
5'SS Class:
major
3'SS Sequence:
CTTCGCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCCCAA
U12 Branch Point Sequence:
GGATCCCAAACC
Flanking Amino Acid:
GTLSKEQYYKGLREILEIAE
Intron Amino Acid Position:
749

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
60
40.8
Major BPS
54.3
0.11
1.2
64.5
33.7
Major PPT
76.9
0.61
0.8
69.7
31
Minor 5ss
22.7
-3.1
3.2
20
37.8
Minor BPS
49.3
-0
2
62.03
42.5

Associated Gene:

Gene:
EIF4G1
Ensembl Gene ID:
ENSAPLG00000008628
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021790
17043096 - 17051448
8353
ENSAPLT00000008971
17043096 - 17051448
8353
ENSAPLT00000027832
17041205 - 17051404
10200
ENSAPLT00000027538
17048428 - 17051404
2977