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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17050177_17050364_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17050177 - 17050364
Intron Length:
188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
GGTTTTGTCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
CGGGGCTGACTT
Flanking Amino Acid:
EVLGLLCKGMSQKTAGKLWR
Intron Amino Acid Position:
819

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
71.5
38.5
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
74.7
0.56
1
68.8
41.9
Minor 5ss
33.1
-1.9
3.1
38.5
40.7
Minor BPS
39
-0.7
2
48.51
45

Associated Gene:

Gene:
EIF4G1
Ensembl Gene ID:
ENSAPLG00000008628
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027538
17048428 - 17051404
2977
ENSAPLT00000021790
17043096 - 17051448
8353
ENSAPLT00000008971
17043096 - 17051448
8353
ENSAPLT00000027832
17041205 - 17051404
10200