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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17050464_17050567_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17050464 - 17050567
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CCTGCTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCGTGAC
U12 Branch Point Sequence:
GTTTTCTTCTCT
Flanking Amino Acid:
QDVNKFVTEQKLEYTMGGDS
Intron Amino Acid Position:
852

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
48.6
-0
1.2
40.4
40
Major PPT
70.8
0.47
0.8
61.4
35
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
45.3
-0.2
3.6
80.05
42

Associated Gene:

Gene:
EIF4G1
Ensembl Gene ID:
ENSAPLG00000008628
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027538
17048428 - 17051404
2977
ENSAPLT00000021790
17043096 - 17051448
8353
ENSAPLT00000008971
17043096 - 17051448
8353
ENSAPLT00000027832
17041205 - 17051404
10200