About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17050706_17050797_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17050706 - 17050797
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGGGCT
5'SS Class:
major
3'SS Sequence:
ATCCCTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CCCCTCTTACAT
Flanking Amino Acid:
NNQRIYDWIEANLSEEQVSS
Intron Amino Acid Position:
898

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.3
72.6
35.5
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
72
0.5
0.8
65.8
29.4
Minor 5ss
27.3
-2.6
3.4
39.4
46
Minor BPS
46.8
-0.1
1.7
57.38
45.5

Associated Gene:

Gene:
EIF4G1
Ensembl Gene ID:
ENSAPLG00000008628
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027832
17041205 - 17051404
10200
ENSAPLT00000027538
17048428 - 17051404
2977
ENSAPLT00000021790
17043096 - 17051448
8353
ENSAPLT00000008971
17043096 - 17051448
8353