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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17051109_17051222_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17051109 - 17051222
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
CCGCCCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATCCTTTTATCC
Flanking Amino Acid:
ALVVKLEQPPNLLRMFFDAL
Intron Amino Acid Position:
972

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1
60.7
38.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
64
0.32
0.8
53.8
31
Minor 5ss
29.8
-2.3
3.2
40.1
40
Minor BPS
52.5
0.06
1.6
61.24
38.5

Associated Gene:

Gene:
EIF4G1
Ensembl Gene ID:
ENSAPLG00000008628
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027832
17041205 - 17051404
10200
ENSAPLT00000027538
17048428 - 17051404
2977
ENSAPLT00000008971
17043096 - 17051448
8353