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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17062163_17063891_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17062163 - 17063891
Intron Length:
1729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
CACTTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTACCAT
U12 Branch Point Sequence:
TGTGCCGTACCA
Flanking Amino Acid:
NGHVAIRAEKVAEDGTVCDT
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
49.1
-0
1.5
60.8
45.4
Major PPT
72
0.49
0.8
65.6
29.9
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
48.5
-0.1
2.3
67.6
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029967
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033658
17056752 - 17064104
7353