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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17065244_17065591_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17065244 - 17065591
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCTGC
5'SS Class:
major
3'SS Sequence:
ACCTCTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
TCACCCCCACCT
Flanking Amino Acid:
KAKHVRISITEDMDAGDRMT
Intron Amino Acid Position:
925

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
64.4
42.8
Major BPS
64.9
0.37
1
67
29.8
Major PPT
71.6
0.49
0.8
64.8
30.1
Minor 5ss
44.7
-0.6
2.9
59.8
45
Minor BPS
44.4
-0.3
2.1
63.61
45.9

Associated Gene:

Gene:
CLCN2
Ensembl Gene ID:
ENSAPLG00000008974
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009375
17064528 - 17075324
10797