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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17067450_17067815_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17067450 - 17067815
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
GTCCCCTGCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GTCCCCTGCACA
Flanking Amino Acid:
VTLVVFILMKFWMSALATTI
Intron Amino Acid Position:
619

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
66.2
0.36
0.9
60
35.5
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
49.3
-0
2
62.68
43.1

Associated Gene:

Gene:
CLCN2
Ensembl Gene ID:
ENSAPLG00000008974
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045912
17064528 - 17075324
10797
ENSAPLT00000009375
17064528 - 17075324
10797