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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17069442_17069518_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17069442 - 17069518
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCACCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAC
U12 Branch Point Sequence:
ACCCCCTGACCC
Flanking Amino Acid:
FLSFFGGIYENEARNTEMLA
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
62.4
0.31
1.2
72.4
34.6
Major PPT
72.4
0.51
0.8
66.2
28.7
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
48
-0.1
1.8
54.95
43

Associated Gene:

Gene:
CLCN2
Ensembl Gene ID:
ENSAPLG00000008974
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045912
17064528 - 17075324
10797
ENSAPLT00000009375
17064528 - 17075324
10797