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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17069813_17069940_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
17069813 - 17069940
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGTGC
5'SS Class:
major
3'SS Sequence:
TCCATGGCACCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
GCTGTCTCCATG
Flanking Amino Acid:
FTQILAPQAVGSGIPEMKTI
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
65.2
41.8
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
59.5
0.21
1
50.7
42.7
Minor 5ss
37.6
-1.4
3.3
50.7
46
Minor BPS
41.6
-0.8
2
43.05
43.1

Associated Gene:

Gene:
CLCN2
Ensembl Gene ID:
ENSAPLG00000008974
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045912
17064528 - 17075324
10797
ENSAPLT00000009375
17064528 - 17075324
10797