About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17070070_17070187_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
17070070 - 17070187
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
GCTGCGCCCGTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTGCCAC
U12 Branch Point Sequence:
CCACCCGCGACC
Flanking Amino Acid:
MDFAIATCLQAQKWMYGGLD
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
46
-0.2
1.4
53.5
42
Major PPT
58.4
0.19
0.9
50.7
34.1
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
42
-0.6
2.1
48.02
41.9

Associated Gene:

Gene:
CLCN2
Ensembl Gene ID:
ENSAPLG00000008974
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045912
17064528 - 17075324
10797
ENSAPLT00000009375
17064528 - 17075324
10797