Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17076770_17076871_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17076770 - 17076871

Intron Length:

102

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGCCCG

5'SS Class:

major

3'SS Sequence:

TTTCCCCCCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTCAG

U12 Branch Point Sequence:

CCCTCTTTCAGC

Flanking Amino Acid:

RDNPCCAKCRAPDTPPEKVH

Intron Amino Acid Position:

860

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.5

0.53

1.1

53.6

45.1

Major BPS

63.7

0.34

1.6

39.9

Major PPT

79.4

0.66

0.7

73.8

24.3

Minor 5ss

33.2

-1.9

40.9

44.9

Minor BPS

46.7

-0.2

52.59

45.8

Associated Gene:

Gene:

CHRD

Ensembl Gene ID:

ENSAPLG00000031090

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045207

17076711 - 17084890

8180