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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17076966_17077108_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17076966 - 17077108
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CCCCACCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
CATTCCCCACCC
Flanking Amino Acid:
EMKCILCWCVSGETHCQRQE
Intron Amino Acid Position:
829

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
64.8
0.33
0.8
57.2
26.6
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
46.2
-0.3
2.1
60.66
44.1

Associated Gene:

Gene:
CHRD
Ensembl Gene ID:
ENSAPLG00000031090
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045207
17076711 - 17084890
8180