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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17077264_17077346_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17077264 - 17077346
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTGCA
5'SS Class:
major
3'SS Sequence:
CCCTCTCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
GGGTGTTCATCC
Flanking Amino Acid:
SPSDCCKQCPAPEKSVPELA
Intron Amino Acid Position:
777

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.2
66.1
39.9
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
74.1
0.54
0.7
68.4
25.2
Minor 5ss
37.4
-1.4
3.3
50.7
45.6
Minor BPS
41.4
-0.6
2
47.75
41.9

Associated Gene:

Gene:
CHRD
Ensembl Gene ID:
ENSAPLG00000031090
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045207
17076711 - 17084890
8180