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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17078985_17079070_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17078985 - 17079070
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCAGG
5'SS Class:
major
3'SS Sequence:
TGTCTGTGCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAC
U12 Branch Point Sequence:
TTTACCACCAGC
Flanking Amino Acid:
PYSGLLARYTEMPVPLAGQL
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.8
0.35
1.3
54.7
49.5
Major BPS
61.7
0.29
1.1
55
40.4
Major PPT
69.9
0.45
1
64.7
41.3
Minor 5ss
43.3
-0.7
3
58
46.3
Minor BPS
41.7
-0.6
2.4
60.44
44.3

Associated Gene:

Gene:
CHRD
Ensembl Gene ID:
ENSAPLG00000031090
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045207
17076711 - 17084890
8180