Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17079442_17079526_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17079442 - 17079526

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGGGC

5'SS Class:

strong_major

3'SS Sequence:

GCCCTGCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGCC

U12 Branch Point Sequence:

TGCCCCTCGGCG

Flanking Amino Acid:

LHENGTLQYQVRVVGTASEV

Intron Amino Acid Position:

381

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

73.9

36.8

Major BPS

26.3

-1.4

4.1

42.8

41.8

Major PPT

64.6

0.33

0.9

57.1

33.4

Minor 5ss

29.6

-2.3

3.5

41.1

45.6

Minor BPS

36.9

-1.1

3.5

49.26

44.4

Associated Gene:

Gene:

CHRD

Ensembl Gene ID:

ENSAPLG00000031090

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045207

17076711 - 17084890

8180