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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17082501_17083063_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17082501 - 17083063
Intron Length:
563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
CCCCTCCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGGCAC
U12 Branch Point Sequence:
CGGCTTGGCACG
Flanking Amino Acid:
MRCVICHCEPQRNHRGKAAG
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
63.4
35.3
Major BPS
50
0
1.5
63.1
44.5
Major PPT
70.1
0.45
0.8
61
29.3
Minor 5ss
26.7
-2.7
3.2
34.9
41.1
Minor BPS
31.7
-1.5
2
28.99
35.4

Associated Gene:

Gene:
CHRD
Ensembl Gene ID:
ENSAPLG00000031090
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045207
17076711 - 17084890
8180