Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17087149_17090033_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

17087149 - 17090033

Intron Length:

2885

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCAAGGGGT

5'SS Class:

strong_major

3'SS Sequence:

ATCTCTCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACGCAA

U12 Branch Point Sequence:

CCGCCACCATCT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.9

1.06

0.8

84.7

29.3

Major BPS

46.3

-0.2

1.2

34.1

Major PPT

0.68

0.8

30.4

Minor 5ss

20.6

-3.4

4.2

37.8

47.1

Minor BPS

35.8

-1

47.53

44.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025180

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036450

17087035 - 17092509

5475