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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17091436_17091531_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17091436 - 17091531
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGGAGC
5'SS Class:
major
3'SS Sequence:
TCTGCCCCGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
TGTCCCCAGACC
Flanking Amino Acid:
RGGQGHGEESEPVPSSLGAQ
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
65.6
40
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
67
0.38
1
61.6
35.1
Minor 5ss
27.3
-2.6
3
30.8
36.9
Minor BPS
48.4
-0.1
2
65.34
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025180
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036450
17087035 - 17092509
5475