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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17106777_17106936_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17106777 - 17106936
Intron Length:
160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTCGC
5'SS Class:
major
3'SS Sequence:
CCTCTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TGACTCTTCACC
Flanking Amino Acid:
SFDLVAQMTAEDLLRIGVTL
Intron Amino Acid Position:
980

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
60.8
44.4
Major BPS
77.5
0.68
1
79.6
33
Major PPT
85.1
0.79
0.7
79.7
25.6
Minor 5ss
35.8
-1.6
2.9
41.2
39
Minor BPS
55.3
0.15
1.8
65.26
39.9

Associated Gene:

Gene:
EPHB3
Ensembl Gene ID:
ENSAPLG00000009704
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010216
17105906 - 17118800
12895