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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17107093_17107236_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17107093 - 17107236
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTCAGTGGG
5'SS Class:
major
3'SS Sequence:
TCTCGCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
CCCTCCGTGACC
Flanking Amino Acid:
SLKVIASVQSGVSQPLLDRT
Intron Amino Acid Position:
928

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.4
58
47.1
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
72.4
0.5
0.8
65.6
30.3
Minor 5ss
27.1
-2.6
2.9
23.8
36.9
Minor BPS
51.1
0.02
2.1
60.95
45.2

Associated Gene:

Gene:
EPHB3
Ensembl Gene ID:
ENSAPLG00000009704
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010216
17105906 - 17118800
12895