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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17107431_17107510_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17107431 - 17107510
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
CGTCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTCAC
U12 Branch Point Sequence:
GGGCTCACAGCC
Flanking Amino Acid:
RPYWDMSNQDVINAVEQDYR
Intron Amino Acid Position:
864

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.3
74.6
37.4
Major BPS
52.1
0.05
1.3
57
41.8
Major PPT
72.3
0.5
0.8
65.7
30.3
Minor 5ss
35.3
-1.7
3.2
44.3
36.5
Minor BPS
38.7
-0.8
1.8
42.79
37.3

Associated Gene:

Gene:
EPHB3
Ensembl Gene ID:
ENSAPLG00000009704
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010216
17105906 - 17118800
12895