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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17107972_17108172_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17107972 - 17108172
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCATC
5'SS Class:
major
3'SS Sequence:
TCTCCCCGGGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
GGGTGCTGAAAA
Flanking Amino Acid:
ENCALDSFLRLNDGQFTVIQ
Intron Amino Acid Position:
742

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
72.2
39.5
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
60.9
0.25
1
58.1
33.1
Minor 5ss
38.1
-1.3
3
43.8
43.8
Minor BPS
46.6
-0.2
2
55.43
42.7

Associated Gene:

Gene:
EPHB3
Ensembl Gene ID:
ENSAPLG00000009704
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010216
17105906 - 17118800
12895