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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17111180_17117685_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17111180 - 17117685
Intron Length:
6506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
GTGCCCTTCATT
Flanking Amino Acid:
EPTMKDTQCQACGPGTFKSK
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
75
0.62
1.1
77.2
36
Major PPT
81.9
0.72
0.7
76.6
25.5
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
59.3
0.37
1.8
74.09
42.9

Associated Gene:

Gene:
EPHB3
Ensembl Gene ID:
ENSAPLG00000009704
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010216
17105906 - 17118800
12895