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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17118359_17118611_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17118359 - 17118611
Intron Length:
253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
GGGGTCTGACAC
Flanking Amino Acid:
LAWTTHPETGWEEVSGYDEA
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.7
44.5
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
81.8
0.72
0.7
76.1
26
Minor 5ss
37.4
-1.4
3
42.1
44.4
Minor BPS
40.1
-0.7
1.7
41.42
38.4

Associated Gene:

Gene:
EPHB3
Ensembl Gene ID:
ENSAPLG00000009704
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010216
17105906 - 17118800
12895