Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17153441_17154661_R

Intron Information:

Intron Rank:

137739

Intron Class:

major

Intron Phase:

Intron Coordinates:

17153441 - 17154661

Intron Length:

1221

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAGGG

5'SS Class:

strong_major

3'SS Sequence:

TATTTTTTTTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

AATATTTTAATA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

65.9

40.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

89.4

0.89

0.7

89.2

27.3

Minor 5ss

24.4

-2.9

3.1

29.4

43.3

Minor BPS

0.44

1.2

67.09

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021627

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018161

17152183 - 17190248

38066