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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_172348_174087_F

Intron Information:

Intron Rank:
125612
Intron Class:
major
Intron Phase:
Intron Coordinates:
172348 - 174087
Intron Length:
1740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TACAATATTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATACAAT
U12 Branch Point Sequence:
GATACAATATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.7
29.8
Major BPS
56.4
0.16
1.3
65.1
38.1
Major PPT
69.4
0.44
1
58.9
45.4
Minor 5ss
36.9
-1.5
2.7
44
38.6
Minor BPS
42
-0.6
2
51.85
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017672
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048442
146033 - 174378
28346
ENSAPLT00000045842
147801 - 174378
26578
ENSAPLT00000023370
147801 - 174378
26578