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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17245332_17245424_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17245332 - 17245424
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTTTTTTCAATC
Flanking Amino Acid:
DSDCGVFVLQYCKCLALDQP
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
84.6
0.78
0.7
83.9
24.3
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
61.3
0.33
1.5
69.41
36.9

Associated Gene:

Gene:
SENP5
Ensembl Gene ID:
ENSAPLG00000005903
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006117
17244614 - 17260346
15733