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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17245476_17247067_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17245476 - 17247067
Intron Length:
1592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
AAGGATCTAACA
Flanking Amino Acid:
LQGWQTAVTKCIPQQKNDSD
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
73
36.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
87.7
0.85
0.7
85.6
29.1
Minor 5ss
32.4
-2
3.3
43.9
43.9
Minor BPS
44.9
-0.3
1.8
52.53
39.3

Associated Gene:

Gene:
SENP5
Ensembl Gene ID:
ENSAPLG00000005903
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006117
17244614 - 17260346
15733