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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17247152_17248845_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17247152 - 17248845
Intron Length:
1694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTATAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
CTTTCCTTTATA
Flanking Amino Acid:
QGIHFKFCVENIRKYLLTEA
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
72.5
0.51
1.1
74.5
33.1
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
72
0.68
1.6
79.05
37.5

Associated Gene:

Gene:
SENP5
Ensembl Gene ID:
ENSAPLG00000005903
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006117
17244614 - 17260346
15733