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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17248984_17251604_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
17248984 - 17251604
Intron Length:
2621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCGTTT
5'SS Class:
weak_major
3'SS Sequence:
TTCTTCTTGCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TTGTCTCTAATG
Flanking Amino Acid:
YNGVKRWTKKVDLFKKTLLL
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.2
72.1
39.9
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
81.5
0.71
0.9
76.7
37.5
Minor 5ss
65.1
0.51
2.7
81.8
38.5
Minor BPS
61.3
0.22
1.7
67.61
40.7

Associated Gene:

Gene:
SENP5
Ensembl Gene ID:
ENSAPLG00000005903
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006117
17244614 - 17260346
15733