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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17251683_17253582_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17251683 - 17253582
Intron Length:
1900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
CTGTGCTCATTC
Flanking Amino Acid:
ELIMDAVPEKVHFFNSFFHR
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
82
31
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
84.8
0.78
0.6
84.1
24
Minor 5ss
29.7
-2.3
3.7
45.9
49.3
Minor BPS
43.9
-0.4
2.1
53.79
44.7

Associated Gene:

Gene:
SENP5
Ensembl Gene ID:
ENSAPLG00000005903
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006117
17244614 - 17260346
15733