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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17254412_17254564_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17254412 - 17254564
Intron Length:
153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGTGTAGC
5'SS Class:
strong_major
3'SS Sequence:
AATCCTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
ATTGACTTACTT
Flanking Amino Acid:
KEVFNEDFSHRKPFITREIM
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
74
36.6
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
69.8
0.45
0.9
66.4
39.7
Minor 5ss
36.7
-1.5
2.6
45.3
42.8
Minor BPS
54.2
0.21
1.9
75.01
42.1

Associated Gene:

Gene:
SENP5
Ensembl Gene ID:
ENSAPLG00000005903
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006117
17244614 - 17260346
15733