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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17259667_17260166_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
17259667 - 17260166
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
CTTATTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTTCCCTTATTC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
65.2
40.8
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
87.1
0.84
0.7
84.7
30
Minor 5ss
32.8
-2
3.3
40.9
45.3
Minor BPS
70.8
0.63
1.5
79.93
35.1

Associated Gene:

Gene:
SENP5
Ensembl Gene ID:
ENSAPLG00000005903
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006117
17244614 - 17260346
15733