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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17324124_17325549_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17324124 - 17325549
Intron Length:
1426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ACCACTTTAAAT
Flanking Amino Acid:
RIEKVRVLPQGPNNEILFLE
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
32.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
87.4
0.84
0.7
80.6
31.5
Minor 5ss
32
-2.1
3.1
39.6
46.4
Minor BPS
59
0.36
1.5
68.03
42.8

Associated Gene:

Gene:
AHSG
Ensembl Gene ID:
ENSAPLG00000006249
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006482
17323920 - 17330384
6465