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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17335382_17339419_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17335382 - 17339419
Intron Length:
4038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTGCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
TGGGATATGACC
Flanking Amino Acid:
RIFSVREHPQEITGSVFYLI
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.7
89.2
17.7
Major BPS
60.3
0.26
1
65.5
28
Major PPT
81
0.7
0.9
80.5
37
Minor 5ss
36.4
-1.5
2.9
48.7
47.5
Minor BPS
43.6
-0.5
1.8
51.98
39.5

Associated Gene:

Gene:
FETUB
Ensembl Gene ID:
ENSAPLG00000006369
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006605
17335160 - 17344671
9512