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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17339531_17340917_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17339531 - 17340917
Intron Length:
1387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGAATT
5'SS Class:
major
3'SS Sequence:
TATATTGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTTTCTACAT
Flanking Amino Acid:
DCTARPAHKTVYGQCKAIIY
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
77.9
36.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.1
0.52
0.9
70.6
40.7
Minor 5ss
42.3
-0.8
3.2
68.6
41.7
Minor BPS
46.8
-0.1
2
68.92
42.3

Associated Gene:

Gene:
FETUB
Ensembl Gene ID:
ENSAPLG00000006369
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006605
17335160 - 17344671
9512