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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17356428_17358921_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17356428 - 17358921
Intron Length:
2494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TGTTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TCACCGTGAAAA
Flanking Amino Acid:
LYMVMEAKRTVGPDKQLHVK
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
78.3
0.7
1
80
32.1
Major PPT
88.9
0.88
0.7
81.2
36.5
Minor 5ss
37.3
-1.4
2.7
48
41.7
Minor BPS
44.7
-0.4
2.2
56.18
42.2

Associated Gene:

Gene:
KNG1
Ensembl Gene ID:
ENSAPLG00000006515
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006792
17356233 - 17370798
14566