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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17359033_17360001_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17359033 - 17360001
Intron Length:
969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
TATGTATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
GCAATCTTAAGA
Flanking Amino Acid:
DCDYKASAEAKTGECTAQVH
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.7
35.7
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
80.5
0.69
0.9
74
40.3
Minor 5ss
39.4
-1.2
3.3
58.2
40.5
Minor BPS
51.6
0.05
1.7
57.16
42

Associated Gene:

Gene:
KNG1
Ensembl Gene ID:
ENSAPLG00000006515
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006792
17356233 - 17370798
14566