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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17360087_17362267_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17360087 - 17362267
Intron Length:
2181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
AAGCCCTGCATG
Flanking Amino Acid:
NVSQDCQIVPVPPKITHSQA
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
87.2
29.5
Major BPS
72.8
0.57
1
81
30.3
Major PPT
91.3
0.93
0.6
84.1
30.8
Minor 5ss
36.3
-1.5
3
50.7
45.8
Minor BPS
44
-0.6
1.9
45.48
40.8

Associated Gene:

Gene:
KNG1
Ensembl Gene ID:
ENSAPLG00000006515
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006792
17356233 - 17370798
14566