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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17365477_17366578_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17365477 - 17366578
Intron Length:
1102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
TGTTCCTTAGAT
Flanking Amino Acid:
VDVASQCKFPAEDVVNPPTL
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
88.7
25.1
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
82.7
0.74
0.9
77.3
37
Minor 5ss
43.5
-0.7
2.6
59.2
45.4
Minor BPS
70.7
0.73
1.7
86.64
38.6

Associated Gene:

Gene:
KNG1
Ensembl Gene ID:
ENSAPLG00000006515
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006792
17356233 - 17370798
14566