Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17391038_17391294_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17391038 - 17391294

Intron Length:

257

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAAAA

5'SS Class:

strong_major

3'SS Sequence:

AAATGTTCTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGTAAAT

U12 Branch Point Sequence:

ATGTGCTGACAT

Flanking Amino Acid:

IFQKLSTNIQVVLLSATMPM

Intron Amino Acid Position:

193

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

79.3

28.7

Major BPS

58.4

0.21

1.2

38.7

Major PPT

65.4

0.35

55.8

44.6

Minor 5ss

32.1

-2

39.7

45.8

Minor BPS

44.6

-0.3

2.2

64.43

45.6

Associated Gene:

Gene:

EIF4A2

Ensembl Gene ID:

ENSAPLG00000006751

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026892

17388145 - 17393450

5306

ENSAPLT00000007048

17388145 - 17394810

6666