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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17396023_17397077_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17396023 - 17397077
Intron Length:
1055

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTCC
5'SS Class:
major
3'SS Sequence:
TACCCTGCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
TTTTCTTCTACC
Flanking Amino Acid:
SFERLETVAKNLINEGYAVS
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
61
38.8
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
67.3
0.39
0.9
60.5
35
Minor 5ss
36.3
-1.6
3.5
51
45.8
Minor BPS
63.1
0.4
1.9
79
36.5

Associated Gene:

Gene:
RFC4
Ensembl Gene ID:
ENSAPLG00000007380
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007713
17395238 - 17406369
11132