Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17397159_17398051_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17397159 - 17398051

Intron Length:

893

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

TAATTTGTTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTAAT

U12 Branch Point Sequence:

TAATTTGTTACA

Flanking Amino Acid:

TENIVTEIAGVIPKETMDGL

Intron Amino Acid Position:

266

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

0.9

81.4

32.7

Major BPS

75.6

0.64

1.1

75.7

36.5

Major PPT

78.8

0.65

72.6

41.9

Minor 5ss

33.9

-1.8

3.3

40.8

45.4

Minor BPS

45.8

-0.3

2.2

60.29

40.1

Associated Gene:

Gene:

RFC4

Ensembl Gene ID:

ENSAPLG00000007380

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007713

17395238 - 17406369

11132