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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17398178_17399138_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17398178 - 17399138
Intron Length:
961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCTGAG
5'SS Class:
major
3'SS Sequence:
AATTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
ATTTTCTCAAAT
Flanking Amino Acid:
EKENVKISSEAVSYLVKVSE
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.2
63.4
43.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
81.7
0.71
0.8
78.2
35.3
Minor 5ss
36.5
-1.5
3.4
48.8
47.4
Minor BPS
66.9
0.61
1.6
83.97
36.2

Associated Gene:

Gene:
RFC4
Ensembl Gene ID:
ENSAPLG00000007380
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007713
17395238 - 17406369
11132