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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17399603_17400577_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17399603 - 17400577
Intron Length:
975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
CCTTGTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTAACTTGATCT
Flanking Amino Acid:
AQLTASGSRSDGKPCPPFKI
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.5
37.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83.4
0.75
0.8
80.3
31.8
Minor 5ss
36.6
-1.5
3.3
47.2
42.3
Minor BPS
54
0.2
1.8
74.71
41.7

Associated Gene:

Gene:
RFC4
Ensembl Gene ID:
ENSAPLG00000007380
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007713
17395238 - 17406369
11132